We elicit data-driven prior parameters from a `flowSet`

object for
specified channels. For each sample in the `flowSet`

object, we apply the
given `prior_method`

to elicit the priors parameters.

prior_flowclust(
flow_set,
channels,
prior_method = c("kmeans"),
K = 2,
nu0 = 4,
w0 = c(10, 10),
shrink = 1e-06,
...
)

## Arguments

flow_set |
a `flowSet` object |

channels |
a character vector containing the channels in the
`flowSet` from which we elicit the prior parameters for the Student's t
mixture |

prior_method |
the method to elicit the prior parameters |

K |
the number of mixture components to identify |

nu0 |
prior degrees of freedom of the Student's t mixture components. |

w0 |
the number of prior pseudocounts of the Student's t mixture components. (only the first element is used and the rest is ignored at the moment) |

shrink |
the amount of eigenvalue shrinkage to add in the case the prior
covariance matrices are singular. See details. |

... |
Additional arguments passed to the prior elicitation method selected |

## Value

list of the necessary prior parameters

## Details

Currently, we have implemented only two methods. In the case that one channel
is given, we use the kernel-density estimator (KDE) approach for each sample
to obtain `K`

peaks from which we elicit prior parameters. Otherwise,
if more than one channel is specified, we apply K-Means to each of the samples
in the `flowSet`

and aggregate the clusters to elicit the prior
parameters.

In the rare case that a prior covariance matrix is singular, we shrink the
eigenvalues of the matrix slightly to ensure that it is positive definite. For
instance, if the `flow_set`

has two samples, this case can occur. The
amount of shrinkage is controlled in `shrink`

.