It is usually called by plot method for fcTree instead of directly by users.

plot(x, y, samples = NULL, posteriors = FALSE, xlim = NULL, ylim = NULL,
node = NULL, data = NULL, breaks = 20, lwd = 1, ...)

Arguments

x

fcFilterList

y

character channel name

samples

character a vector of sample names to be plotted

posteriors

logical indicating whether posteriors should be plotted

xlim, ylim

scale settings for x,y axises

node

character population name associated with the fcFilterList

data

GatingSet object

breaks

passed to hist

lwd

line width

...

other arguments passed to base plot

Examples

if (FALSE) { env1<-new.env(parent=emptyenv()) #gt is a gatingTemplate, gs is a GatingSet gt_gating(gt,gs,env1) #the flowClust gating results are stored in env1 plot(env1$fct,"nonDebris",post=T) #plot the priors as well as posteriors for the "nonDebris" gate }